Knowledge base index
| Description | |
|---|---|
| Statistics | Number of triples: |
Fulltext index
| Description | |
|---|---|
| Statistics |
Number of distinct text records: Number of distinct word occurrences: Number of distinct entity occurrences: |
Basic settings
| Backend name | BRENDA (prototype) |
|---|---|
| Backend slug | brenda |
| Backend URL | https://sparql.dsmz.de/api/brenda |
| Is default: | Yes |
| Fill known prefixes: | Yes |
| Languages: | en |
| Default maximum | 100 rows |
| Default mode: | 3. SPARQL & context sensitive entities |
Features
| Supported Keywords: | prefix, select, distinct, where, order, limit, offset, optional, by, as, having, not, textlimit, contains-entity, contains-word, filter, group, union, optional, has-predicate, minus, values |
|---|---|
| Supported Functions: | asc, desc, avg, values, score, text, count, sample, min, max, average, concat, group_concat, langMatches, lang, regex, sum |
QLever UI Shortcuts:
| ctrl + enter | Send query to backend |
| tab | Jump to the next placeholder |
| ctrl + space | Invoke auto suggestions |
| ▲ or ▼ | Move through suggestions |
| enter | Choose the selected suggestion |
| esc | Close suggestion window |
| ctrl + f | Search in editor (supports RegEx) |
| ctrl + r | Search and replace in editor |
- Find all active EC classes
- Metabolic pathways and the number of involved reactions
- Reaction substrates and products and their molecular structure
- Pathways and their corresponding EC numbers
- Find activating compounds for a certain EC class
- Find inhibitors for a certain EC class
- Enzyme expression profile in tissues of a specific organism
- Human enzymes present in the nucleus
- Sorry, no examples found :(
Warning:
Query results:
Error:
Schema for the BRENDA endpoint
This schema is based on the DSMZ Digital Diversity Ontology (D3O) and is used to query the BRENDA endpoint.
d3o:Reference
| rdf:type | d3o:Reference |
| d3o:hasPageRange | xsd:string |
| d3o:hasVolume | xsd:string |
| d3o:hasPubMedID | xsd:string |
| dcterms:creator | xsd:string |
| d3o:hasJournalAbbreviation | xsd:string |
| d3o:hasBibliographicInformation | xsd:string |
| dcterms:issued | xsd:gYear |
| dcterms:title | xsd:string |
| d3o:hasPMCID | xsd:string |
| dcterms:title | rdf:langString |
d3o:Product
| rdf:type | d3o:Product |
| rdf:type | d3o:ChemicalRole |
| rdf:type | d3o:ConceptualEntity |
| d3o:partOf | d3o:Reaction |
| d3o:refersToCompound | d3o:ChemicalMaterial |
d3o:ChemicalRole
| rdf:type | d3o:ChemicalRole |
| rdf:type | d3o:ConceptualEntity |
| d3o:refersToCompound | d3o:ChemicalMaterial |
| d3o:hasReference | d3o:Reference |
| rdf:type | d3o:Effector |
| d3o:foundIn | d3o:BiologicalMaterial |
| d3o:affectsClass | d3o:ECNumber |
| d3o:partOf | d3o:Reaction |
| rdf:type | d3o:Inhibitor |
| d3o:inhibits | d3o:Enzyme |
| rdf:type | d3o:Substrate |
| rdf:type | d3o:Product |
| rdf:type | d3o:Activator |
| d3o:activates | d3o:Protein |
| rdf:type | d3o:Cofactor |
| d3o:isCofactorOf | d3o:Protein |
d3o:ConceptualEntity
| rdf:type | d3o:ConceptualEntity |
| rdf:type | d3o:ChemicalRole |
| d3o:refersToCompound | d3o:ChemicalMaterial |
| d3o:hasReference | d3o:Reference |
| rdf:type | d3o:Effector |
| d3o:foundIn | d3o:BiologicalMaterial |
| d3o:affectsClass | d3o:ECNumber |
| d3o:partOf | d3o:Reaction |
| rdf:type | d3o:Inhibitor |
| d3o:inhibits | d3o:Enzyme |
| rdf:type | d3o:Substrate |
| rdf:type | d3o:Product |
| rdf:type | d3o:Activator |
| d3o:activates | d3o:Protein |
| rdf:type | d3o:Cofactor |
| d3o:isCofactorOf | d3o:Protein |
| rdf:type | d3o:Bacteria |
| rdf:type | d3o:OrganismGroup |
| rdf:type | d3o:Microorganism |
| rdf:type | d3o:BiologicalMaterial |
| rdf:type | d3o:Prokaryotes |
d3o:Substrate
| rdf:type | d3o:Substrate |
| rdf:type | d3o:ChemicalRole |
| rdf:type | d3o:ConceptualEntity |
| d3o:refersToCompound | d3o:ChemicalMaterial |
| d3o:partOf | d3o:Reaction |
d3o:Effector
| rdf:type | d3o:Effector |
| rdf:type | d3o:ChemicalRole |
| rdf:type | d3o:ConceptualEntity |
| d3o:foundIn | d3o:BiologicalMaterial |
| d3o:hasReference | d3o:Reference |
| d3o:refersToCompound | d3o:ChemicalMaterial |
| d3o:affectsClass | d3o:ECNumber |
| rdf:type | d3o:Inhibitor |
| d3o:inhibits | d3o:Enzyme |
| rdf:type | d3o:Activator |
| d3o:activates | d3o:Protein |
d3o:Activator
| rdf:type | d3o:Effector |
| rdf:type | d3o:ChemicalRole |
| rdf:type | d3o:Activator |
| rdf:type | d3o:ConceptualEntity |
| d3o:foundIn | d3o:BiologicalMaterial |
| d3o:activates | d3o:Protein |
| d3o:hasReference | d3o:Reference |
| d3o:refersToCompound | d3o:ChemicalMaterial |
| d3o:affectsClass | d3o:ECNumber |
d3o:ChemicalMaterial
| rdf:type | d3o:ChemicalMaterial |
| rdf:type | d3o:ChemicalCompound |
| dcterms:hasIdentifier | xsd:int |
| d3o:hasStructure | d3o:MolecularStructure |
| d3o:hasSynonym | xsd:string |
| rdfs:label | xsd:string |
| d3o:hasSynonym | rdf:langString |
| rdfs:label | rdf:langString |
d3o:ChemicalCompound
| rdf:type | d3o:ChemicalMaterial |
| rdf:type | d3o:ChemicalCompound |
| dcterms:hasIdentifier | xsd:int |
| d3o:hasStructure | d3o:MolecularStructure |
| d3o:hasSynonym | xsd:string |
| rdfs:label | xsd:string |
| d3o:hasSynonym | rdf:langString |
| rdfs:label | rdf:langString |
d3o:Inhibitor
| rdf:type | d3o:ConceptualEntity |
| rdf:type | d3o:Effector |
| rdf:type | d3o:ChemicalRole |
| rdf:type | d3o:Inhibitor |
| d3o:refersToCompound | d3o:ChemicalMaterial |
| d3o:inhibits | d3o:Enzyme |
| d3o:affectsClass | d3o:ECNumber |
| d3o:hasReference | d3o:Reference |
| d3o:foundIn | d3o:BiologicalMaterial |
d3o:Reaction
| rdf:type | d3o:Reaction |
| d3o:catalyzedByClass | d3o:ECNumber |
| d3o:isIubmbReaction | xsd:boolean |
| rdfs:label | xsd:string |
| d3o:hasReference | d3o:Reference |
| d3o:catalyzedBy | d3o:Enzyme |
| d3o:partOf | d3o:Pathway |
| rdfs:label | rdf:langString |
d3o:MolecularStructure
| rdf:type | d3o:MolecularStructure |
| d3o:hasInChI | xsd:string |
| d3o:hasInChIKey | xsd:string |
d3o:BiologicalMaterial
| rdf:type | d3o:BiologicalMaterial |
| rdfs:label | xsd:string |
| d3o:hasSynonym | xsd:string |
| dcterms:hasTaxID | xsd:int |
| d3o:hasIdentifier | d3o:Identifier |
| rdf:type | d3o:Bacteria |
| rdf:type | d3o:OrganismGroup |
| rdf:type | d3o:Microorganism |
| rdf:type | d3o:ConceptualEntity |
| rdf:type | d3o:Prokaryotes |
| d3o:hasSynonym | rdf:langString |
| rdfs:label | rdf:langString |
d3o:Enzyme
| rdf:type | d3o:Enzyme |
| rdf:type | d3o:Protein |
| rdf:type | d3o:GeneProduct |
| d3o:hasReference | d3o:Reference |
| d3o:isClassifiedAs | d3o:ECNumber |
| d3o:foundIn | d3o:BiologicalMaterial |
| d3o:hasIdentifier | d3o:EnzymeIdentifier |
d3o:Protein
| rdf:type | d3o:Enzyme |
| rdf:type | d3o:Protein |
| rdf:type | d3o:GeneProduct |
| d3o:hasReference | d3o:Reference |
| d3o:isClassifiedAs | d3o:ECNumber |
| d3o:foundIn | d3o:BiologicalMaterial |
| d3o:hasIdentifier | d3o:EnzymeIdentifier |
d3o:GeneProduct
| rdf:type | d3o:Enzyme |
| rdf:type | d3o:Protein |
| rdf:type | d3o:GeneProduct |
| d3o:hasReference | d3o:Reference |
| d3o:isClassifiedAs | d3o:ECNumber |
| d3o:foundIn | d3o:BiologicalMaterial |
| d3o:hasIdentifier | d3o:EnzymeIdentifier |
d3o:MoleculeIdentifier
| rdf:type | d3o:MoleculeIdentifier |
| rdf:type | d3o:ECNumber |
| rdf:type | d3o:Identifier |
| rdf:type | d3o:EnzymeIdentifier |
| rdfs:label | xsd:string |
| d3o:hasSynonyms | xsd:string |
| dcterms:description | xsd:string |
| d3o:hasSystematicName | xsd:string |
| dcterms:description | rdf:langString |
d3o:ECNumber
| rdf:type | d3o:MoleculeIdentifier |
| rdf:type | d3o:ECNumber |
| rdf:type | d3o:Identifier |
| rdf:type | d3o:EnzymeIdentifier |
| rdfs:label | xsd:string |
| d3o:hasSynonyms | xsd:string |
| dcterms:description | xsd:string |
| d3o:hasSystematicName | xsd:string |
| dcterms:description | rdf:langString |
d3o:Identifier
| rdf:type | d3o:MoleculeIdentifier |
| rdf:type | d3o:ECNumber |
| rdf:type | d3o:Identifier |
| rdf:type | d3o:EnzymeIdentifier |
| rdfs:label | xsd:string |
| d3o:hasSynonyms | xsd:string |
| dcterms:description | xsd:string |
| d3o:hasSystematicName | xsd:string |
| dcterms:description | rdf:langString |
d3o:EnzymeIdentifier
| rdf:type | d3o:MoleculeIdentifier |
| rdf:type | d3o:ECNumber |
| rdf:type | d3o:Identifier |
| rdf:type | d3o:EnzymeIdentifier |
| rdfs:label | xsd:string |
| d3o:hasSynonyms | xsd:string |
| dcterms:description | xsd:string |
| d3o:hasSystematicName | xsd:string |
| dcterms:description | rdf:langString |
d3o:Tissue
| rdf:type | d3o:Tissue |
| rdf:type | d3o:AnatomicStructure |
| rdfs:label | xsd:string |
| d3o:hasReference | d3o:Reference |
| d3o:partOf | d3o:BiologicalMaterial |
| d3o:expresses | d3o:Protein |
d3o:AnatomicStructure
| rdf:type | d3o:Tissue |
| rdf:type | d3o:AnatomicStructure |
| rdfs:label | xsd:string |
| d3o:hasReference | d3o:Reference |
| d3o:partOf | d3o:BiologicalMaterial |
| d3o:expresses | d3o:Protein |
d3o:Localization
| rdf:type | d3o:Localization |
| rdfs:label | xsd:string |
| d3o:expresses | d3o:Protein |
| d3o:partOf | d3o:BiologicalMaterial |
| d3o:hasReference | d3o:Reference |
d3o:Cofactor
| rdf:type | d3o:Cofactor |
| rdf:type | d3o:ChemicalRole |
| rdf:type | d3o:ConceptualEntity |
| d3o:hasReference | d3o:Reference |
| d3o:isCofactorOf | d3o:Protein |
| d3o:refersToCompound | d3o:ChemicalCompound |
d3o:Pathway
| rdf:type | d3o:Pathway |
| rdfs:label | xsd:string |
| d3o:hasReaction | d3o:Reaction |
d3o:Bacteria
| rdf:type | d3o:Bacteria |
| rdf:type | d3o:OrganismGroup |
| rdf:type | d3o:Microorganism |
| rdf:type | d3o:ConceptualEntity |
| rdf:type | d3o:BiologicalMaterial |
| rdf:type | d3o:Prokaryotes |
d3o:OrganismGroup
| rdf:type | d3o:Bacteria |
| rdf:type | d3o:OrganismGroup |
| rdf:type | d3o:Microorganism |
| rdf:type | d3o:ConceptualEntity |
| rdf:type | d3o:BiologicalMaterial |
| rdf:type | d3o:Prokaryotes |
d3o:Microorganism
| rdf:type | d3o:Bacteria |
| rdf:type | d3o:OrganismGroup |
| rdf:type | d3o:Microorganism |
| rdf:type | d3o:ConceptualEntity |
| rdf:type | d3o:BiologicalMaterial |
| rdf:type | d3o:Prokaryotes |
d3o:Prokaryotes
| rdf:type | d3o:Bacteria |
| rdf:type | d3o:OrganismGroup |
| rdf:type | d3o:Microorganism |
| rdf:type | d3o:ConceptualEntity |
| rdf:type | d3o:BiologicalMaterial |
| rdf:type | d3o:Prokaryotes |